Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c4/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c4
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c4_mean_pred_corrected float

liu2026Multiomics_Brain_c4_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Brain_c4_mean_pred_corrected [0.0019, 11.1]
n
44,167,567
mean
0.0685
sd
0.113

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 441675671.38% 44167551
chr1 4235228 1.70% 4235224
chr2 3497513 1.44% 3497513
chr3 2763684 1.39% 2763683
chr4 1919338 1.01% 1919337
chr5 2331454 1.28% 2331452
chr6 2464855 1.44% 2464854
chr7 2319885 1.46% 2319885
chr8 2001402 1.38% 2001402
chr9 1865817 1.35% 1865816
chr10 1964185 1.47% 1964184
chr11 2460719 1.82% 2460719
chr12 2239999 1.68% 2239998
chr13 1006100 0.88% 1006100
chr14 1459659 1.36% 1459658
chr15 1396199 1.37% 1396199
chr16 1571469 1.74% 1571469
chr17 2146151 2.58% 2146151
chr18 940557 1.17% 940557
chr19 1926626 3.29% 1926625
chr20 1218647 1.89% 1218647
chr21 448203 0.96% 448203
chr22 971272 1.91% 971272
chrX 1001899 0.64% 1001897
chrY 16706 0.03% 16706
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44167551 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c4__mean_pred_corrected.bw 334.87 MB eabefd778c90f4d81b289a17145c3dea
genomic_resource.yaml 1.27 KB 4e0b9e6d7a969a06ad3e68022024f52e
statistics/