Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c5_mean_counts_contribs float

liu2026Multiomics_Brain_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c5_mean_counts_contribs [-0.0847, 0.189]
n
129,613,741
mean
0.000309
sd
0.00411

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1296137414.04% 128779779
chr1 11665829 4.69% 11589584
chr2 10862186 4.48% 10792869
chr3 9096942 4.59% 9038006
chr4 6398587 3.36% 6355945
chr5 7456976 4.11% 7409382
chr6 7724860 4.52% 7676100
chr7 7052406 4.43% 7006006
chr8 6380591 4.40% 6339690
chr9 5338570 3.86% 5303881
chr10 5649849 4.22% 5613735
chr11 6720565 4.98% 6678625
chr12 6398509 4.80% 6358345
chr13 3889611 3.40% 3864914
chr14 4197691 3.92% 4171404
chr15 3996157 3.92% 3970232
chr16 4080258 4.52% 4054728
chr17 4966054 5.96% 4934776
chr18 3080436 3.83% 3059043
chr19 4341244 7.41% 4314430
chr20 3123429 4.85% 3103845
chr21 1385498 2.97% 1376715
chr22 2269666 4.47% 2255451
chrX 3518090 2.25% 3495017
chrY 19737 0.03% 17056
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 128779779 1 2578 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c5__mean_counts_contribs.bw 797.64 MB 121a4902e930fbb268b734ddbf4430ac
genomic_resource.yaml 1.31 KB a7d21228dac150b5d26b1b890ba4512c
statistics/