Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c6/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c6
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c6_mean_counts_contribs float

liu2026Multiomics_Brain_c6_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c6_mean_counts_contribs [-0.0803, 0.203]
n
180,103,484
mean
0.00032
sd
0.00402

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1801034845.61% 179062885
chr1 16312087 6.55% 16218104
chr2 14948094 6.17% 14862157
chr3 12009286 6.06% 11939089
chr4 9029434 4.75% 8974744
chr5 10577106 5.83% 10516791
chr6 10472810 6.13% 10412758
chr7 9884942 6.20% 9828037
chr8 8999893 6.20% 8948337
chr9 7678609 5.55% 7634499
chr10 8386506 6.27% 8337057
chr11 9601462 7.11% 9547767
chr12 8737991 6.56% 8687959
chr13 4937363 4.32% 4908410
chr14 5798865 5.42% 5766122
chr15 5590786 5.48% 5558132
chr16 5729151 6.34% 5695932
chr17 7040256 8.46% 7000043
chr18 4387692 5.46% 4360524
chr19 5549574 9.47% 5519038
chr20 4668799 7.24% 4642354
chr21 1858447 3.98% 1847711
chr22 3170099 6.24% 3152354
chrX 4727890 3.03% 4700767
chrY 6342 0.01% 4199
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 179062885 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c6__mean_counts_contribs.bw 1.08 GB 22337ebf703e27fb5c39b500ec7b6c7e
genomic_resource.yaml 1.31 KB a040fc2e8a91f61ad9974d21ab909d44
statistics/