Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c7/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c7
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c7_mean_counts_contribs float

liu2026Multiomics_Brain_c7_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c7_mean_counts_contribs [-0.0728, 0.162]
n
117,364,877
mean
0.00028
sd
0.0037

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1173648773.66% 116618462
chr1 10878219 4.37% 10809057
chr2 9617076 3.97% 9555222
chr3 7865948 3.97% 7814840
chr4 5378260 2.83% 5342621
chr5 6627986 3.65% 6585280
chr6 6819795 3.99% 6776753
chr7 6220550 3.90% 6181075
chr8 5899744 4.06% 5861752
chr9 4848298 3.50% 4816399
chr10 5423433 4.05% 5389468
chr11 6279897 4.65% 6240553
chr12 5748085 4.31% 5711671
chr13 3063634 2.68% 3044067
chr14 3751127 3.50% 3727421
chr15 3668659 3.60% 3645285
chr16 3943048 4.36% 3918365
chr17 4894687 5.88% 4864453
chr18 2519766 3.14% 2502542
chr19 4400118 7.51% 4374415
chr20 2998973 4.65% 2980160
chr21 1190496 2.55% 1182974
chr22 2358654 4.64% 2344265
chrX 2968424 1.90% 2949824
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116618462 1 950 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c7__mean_counts_contribs.bw 721.91 MB 27575bfe0d269817afaf4db8ba5185a3
genomic_resource.yaml 1.31 KB 5242d8d3309a4c74876582982b603713
statistics/