Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c8/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c8
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c8_mean_counts_contribs float

liu2026Multiomics_Brain_c8_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c8_mean_counts_contribs [-0.0624, 0.253]
n
199,136,529
mean
0.000261
sd
0.00396

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1991365296.21% 197904810
chr1 18800072 7.55% 18684962
chr2 16288173 6.73% 16186140
chr3 12822842 6.47% 12741250
chr4 9224849 4.85% 9163177
chr5 10432249 5.75% 10366416
chr6 11684200 6.84% 11611557
chr7 10227868 6.42% 10164158
chr8 8752394 6.03% 8697625
chr9 8491792 6.14% 8440163
chr10 9786815 7.31% 9725926
chr11 10640899 7.88% 10576673
chr12 9361836 7.02% 9304015
chr13 5189529 4.54% 5156205
chr14 6380084 5.96% 6341299
chr15 6553177 6.43% 6512659
chr16 6835132 7.57% 6795971
chr17 9084641 10.91% 9032141
chr18 4357243 5.42% 4328092
chr19 7271839 12.41% 7232628
chr20 5484074 8.51% 5450656
chr21 2413955 5.17% 2398694
chr22 4199682 8.26% 4175664
chrX 4700983 3.01% 4671431
chrY 152201 0.27% 147308
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 197904810 1 2532 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c8__mean_counts_contribs.bw 1.2 GB ab16a83d08528cc10e619ca71d8f9a58
genomic_resource.yaml 1.31 KB 4dd797dc69427fa184f4661c077ed2cb
statistics/