Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c9/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c9
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c9_mean_counts_contribs float

liu2026Multiomics_Brain_c9_mean_counts_contribs
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
 HISTOGRAM FOR liu2026Multiomics_Brain_c9_mean_counts_contribs [-0.0509, 0.127]
n
98,282,975
mean
0.000148
sd
0.00343

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 982829753.06% 97532758
chr1 9329995 3.75% 9258741
chr2 7787206 3.22% 7727327
chr3 6229873 3.14% 6181726
chr4 4354732 2.29% 4319099
chr5 5476154 3.02% 5434181
chr6 5446330 3.19% 5405340
chr7 5243282 3.29% 5203338
chr8 4625370 3.19% 4590038
chr9 4113370 2.97% 4082512
chr10 4458540 3.33% 4423127
chr11 5401382 4.00% 5360877
chr12 4929621 3.70% 4892421
chr13 2468904 2.16% 2449857
chr14 3159125 2.95% 3135431
chr15 3168819 3.11% 3144247
chr16 3376855 3.74% 3352070
chr17 4386658 5.27% 4354404
chr18 2112412 2.63% 2094846
chr19 4085725 6.97% 4057272
chr20 2741026 4.25% 2720679
chr21 952204 2.04% 944911
chr22 1964236 3.87% 1950017
chrX 2447986 1.57% 2429753
chrY 23170 0.04% 20544
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97532758 1 2491 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c9__mean_counts_contribs.bw 604.24 MB 45cb689ee4be226e07185bd93d28b66c
genomic_resource.yaml 1.31 KB d0ec3ac1c59ea1f099b8601f3bd6f679
statistics/