Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c9/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c9
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c9_mean_pred_corrected float

liu2026Multiomics_Brain_c9_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Brain_c9_mean_pred_corrected [0.00147, 16]
n
50,940,116
mean
0.0977
sd
0.205

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 509401161.59% 50938784
chr1 4842065 1.94% 4842060
chr2 4013337 1.66% 4013336
chr3 3223833 1.63% 3223833
chr4 2243719 1.18% 2243719
chr5 2823503 1.56% 2823503
chr6 2842189 1.66% 2842187
chr7 2697634 1.69% 2697634
chr8 2373492 1.64% 2373492
chr9 2128552 1.54% 2128552
chr10 2296548 1.72% 2296548
chr11 2809953 2.08% 2809951
chr12 2558352 1.92% 2558350
chr13 1264232 1.11% 1264231
chr14 1636521 1.53% 1636521
chr15 1643352 1.61% 1643352
chr16 1749212 1.94% 1749210
chr17 2307512 2.77% 2307511
chr18 1083307 1.35% 1083307
chr19 2186259 3.73% 2186256
chr20 1414569 2.20% 1414569
chr21 490518 1.05% 490518
chr22 1018229 2.00% 1018228
chrX 1281198 0.82% 1281198
chrY 12030 0.02% 10718
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50938784 1 1105 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c9__mean_pred_corrected.bw 386.74 MB 8f207a132dd154a4099b052b37e97815
genomic_resource.yaml 1.27 KB 42f16fd8da0a2362defae54a28241908
statistics/