Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c0/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c0
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c0_mean_counts_contribs float

liu2026Multiomics_Eye_c0_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c0_mean_counts_contribs [-0.0848, 0.196]
n
180,728,165
mean
0.000267
sd
0.00406

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1807281655.63% 179747654
chr1 16868063 6.78% 16776341
chr2 14146699 5.84% 14070681
chr3 11187962 5.64% 11125547
chr4 8689636 4.57% 8640032
chr5 9676291 5.33% 9623608
chr6 10128835 5.93% 10073724
chr7 9197780 5.77% 9147578
chr8 7748824 5.34% 7706420
chr9 7944564 5.74% 7901192
chr10 8974996 6.71% 8926006
chr11 10348443 7.66% 10294262
chr12 8553718 6.42% 8507410
chr13 4784659 4.18% 4758340
chr14 5935288 5.54% 5903321
chr15 5799099 5.69% 5767809
chr16 6230948 6.90% 6197274
chr17 8219483 9.87% 8175812
chr18 4480803 5.57% 4454733
chr19 6714695 11.46% 6680408
chr20 4982731 7.73% 4956323
chr21 1924116 4.12% 1913221
chr22 3576451 7.04% 3557905
chrX 4561973 2.92% 4537870
chrY 52108 0.09% 51837
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 179747654 1 950 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c0__mean_counts_contribs.bw 1.09 GB 0ddcab26cbd07cca365a77e7924b282e
genomic_resource.yaml 1.3 KB 2f1997cb898643bfd277399a80805471
statistics/