Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c0/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c0
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c0_mean_pred_corrected float

liu2026Multiomics_Eye_c0_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Eye_c0_mean_pred_corrected [0.000217, 33.6]
n
100,112,315
mean
0.371
sd
0.655

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1001123153.12% 100112253
chr1 9359149 3.76% 9359144
chr2 7842962 3.24% 7842959
chr3 6117698 3.09% 6117696
chr4 4798188 2.52% 4798186
chr5 5329146 2.94% 5329143
chr6 5602473 3.28% 5602469
chr7 5076497 3.19% 5076494
chr8 4263922 2.94% 4263919
chr9 4417569 3.19% 4417566
chr10 4950081 3.70% 4950079
chr11 5760779 4.26% 5760771
chr12 4731705 3.55% 4731701
chr13 2640260 2.31% 2640260
chr14 3294774 3.08% 3294772
chr15 3216342 3.15% 3216340
chr16 3456317 3.83% 3456315
chr17 4615885 5.54% 4615884
chr18 2467072 3.07% 2467069
chr19 3809104 6.50% 3809102
chr20 2744694 4.26% 2744691
chr21 1061993 2.27% 1061993
chr22 1992692 3.92% 1992690
chrX 2533479 1.62% 2533476
chrY 29534 0.05% 29534
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100112253 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c0__mean_pred_corrected.bw 757.62 MB 4fe1e3f5da3ea407c8aa62d967f4ca60
genomic_resource.yaml 1.26 KB 2445ec5c0495f4d043e39d86de393622
statistics/