Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c1/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c1
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c1_mean_counts_contribs float

liu2026Multiomics_Eye_c1_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c1_mean_counts_contribs [-0.0786, 0.236]
n
237,248,343
mean
0.000248
sd
0.00343

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2372483437.39% 235823820
chr1 21911145 8.80% 21782300
chr2 19295180 7.97% 19178313
chr3 15250707 7.69% 15156936
chr4 11737553 6.17% 11661794
chr5 13213889 7.28% 13132467
chr6 14080473 8.24% 13994954
chr7 12379478 7.77% 12303931
chr8 10815258 7.45% 10749234
chr9 10594348 7.66% 10529913
chr10 11852555 8.86% 11781709
chr11 13026745 9.64% 12951592
chr12 11361314 8.52% 11293502
chr13 6420319 5.61% 6380148
chr14 7532474 7.04% 7487375
chr15 7636168 7.49% 7590970
chr16 7778277 8.61% 7734026
chr17 10247154 12.31% 10188867
chr18 5438603 6.77% 5403584
chr19 7677969 13.10% 7636787
chr20 6451765 10.01% 6414656
chr21 2795199 5.98% 2777454
chr22 4653030 9.16% 4627534
chrX 5063824 3.25% 5033625
chrY 34916 0.06% 32149
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 235823820 1 2589 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c1__mean_counts_contribs.bw 1.42 GB 38f55bfb90b9a0ed8cc6e7f260113f0c
genomic_resource.yaml 1.3 KB 866e893c100d1c74adb073f413434367
statistics/