Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c1/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c1
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c1_mean_pred_corrected float

liu2026Multiomics_Eye_c1_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Eye_c1_mean_pred_corrected [0.000395, 75.3]
n
129,711,761
mean
0.471
sd
1.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1297117614.04% 129710223
chr1 12036538 4.83% 12036529
chr2 10506786 4.34% 10506772
chr3 8271597 4.17% 8271585
chr4 6340473 3.33% 6340463
chr5 7169015 3.95% 7169008
chr6 7681005 4.50% 7680997
chr7 6723148 4.22% 6723146
chr8 5868279 4.04% 5868274
chr9 5803952 4.19% 5803944
chr10 6471257 4.84% 6471252
chr11 7155894 5.30% 7155885
chr12 6210793 4.66% 6210788
chr13 3464726 3.03% 3464722
chr14 4146473 3.87% 4146471
chr15 4189811 4.11% 4189805
chr16 4278641 4.74% 4278636
chr17 5712664 6.86% 5712660
chr18 2940764 3.66% 2940762
chr19 4330327 7.39% 4330324
chr20 3525841 5.47% 3525836
chr21 1523726 3.26% 1523724
chr22 2560442 5.04% 2560441
chrX 2780644 1.78% 2780643
chrY 18965 0.03% 17556
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129710223 1 547 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c1__mean_pred_corrected.bw 980.25 MB 18705377e972c5e57ad3331bcd84b1b8
genomic_resource.yaml 1.26 KB d6f34773ae89e1ed47522c51904b7382
statistics/