Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c10/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c10
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c10_mean_counts_contribs float

liu2026Multiomics_Eye_c10_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c10_mean_counts_contribs [-0.0479, 0.116]
n
117,882,041
mean
0.000102
sd
0.00337

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1178820413.67% 117113262
chr1 11355866 4.56% 11281159
chr2 8900041 3.67% 8842461
chr3 7445844 3.75% 7397327
chr4 5763872 3.03% 5724524
chr5 6161275 3.39% 6121034
chr6 6736677 3.94% 6692864
chr7 5939735 3.73% 5900473
chr8 5066712 3.49% 5033525
chr9 5203608 3.76% 5170065
chr10 5475958 4.09% 5440692
chr11 6545830 4.85% 6503788
chr12 5725775 4.30% 5688109
chr13 2974250 2.60% 2954095
chr14 3876335 3.62% 3851526
chr15 3880692 3.80% 3855098
chr16 4078774 4.51% 4053077
chr17 5602896 6.73% 5566817
chr18 2581225 3.21% 2563028
chr19 4921925 8.40% 4890948
chr20 3120304 4.84% 3100260
chr21 1339485 2.87% 1330784
chr22 2409719 4.74% 2394360
chrX 2756932 1.77% 2739053
chrY 18311 0.03% 18195
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117113262 1 947 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c10__mean_counts_contribs.bw 725.02 MB 3e00304f4488d5c0955e8ce2e207840a
genomic_resource.yaml 1.3 KB 0d0bf729338742dc7d077503b8c36241
statistics/