Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c10/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c10
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c10_mean_pred_corrected float

liu2026Multiomics_Eye_c10_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c10_mean_pred_corrected [0.00305, 11.2]
n
62,299,969
mean
0.14
sd
0.214

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 622999691.94% 62299946
chr1 6011742 2.41% 6011738
chr2 4697758 1.94% 4697755
chr3 3912616 1.97% 3912616
chr4 3035398 1.60% 3035397
chr5 3244869 1.79% 3244868
chr6 3571963 2.09% 3571963
chr7 3115759 1.96% 3115757
chr8 2657985 1.83% 2657984
chr9 2745684 1.98% 2745683
chr10 2903090 2.17% 2903090
chr11 3458027 2.56% 3458027
chr12 3021556 2.27% 3021555
chr13 1556806 1.36% 1556805
chr14 2052758 1.92% 2052757
chr15 2047669 2.01% 2047667
chr16 2167882 2.40% 2167880
chr17 2995939 3.60% 2995938
chr18 1352337 1.68% 1352337
chr19 2661632 4.54% 2661631
chr20 1639482 2.54% 1639481
chr21 709618 1.52% 709618
chr22 1267253 2.49% 1267253
chrX 1462747 0.94% 1462747
chrY 9399 0.02% 9399
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62299946 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c10__mean_pred_corrected.bw 471.93 MB 756c506e5b0c04fcb14a316c0e891a53
genomic_resource.yaml 1.27 KB 324aab9a24dc78cf6d4623b26f39c1de
statistics/