Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c11_mean_counts_contribs float

liu2026Multiomics_Eye_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c11_mean_counts_contribs [-0.0454, 0.116]
n
113,086,773
mean
9.9e-05
sd
0.00324

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1130867733.52% 112313797
chr1 10867728 4.37% 10794320
chr2 8627103 3.56% 8568160
chr3 6671977 3.36% 6624866
chr4 4881733 2.57% 4846293
chr5 6079085 3.35% 6036689
chr6 6382203 3.74% 6338232
chr7 5976024 3.75% 5934547
chr8 5007899 3.45% 4973240
chr9 4823606 3.49% 4789790
chr10 5507402 4.12% 5469160
chr11 6375916 4.72% 6332976
chr12 5469572 4.10% 5432607
chr13 2831180 2.48% 2811104
chr14 3575942 3.34% 3551767
chr15 3804521 3.73% 3778195
chr16 4041526 4.47% 4014779
chr17 5481563 6.58% 5445377
chr18 2707361 3.37% 2688538
chr19 4923878 8.40% 4892869
chr20 3134813 4.86% 3113998
chr21 1132389 2.42% 1124707
chr22 2257349 4.44% 2242554
chrX 2500721 1.60% 2483919
chrY 25282 0.04% 25110
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 112313797 1 939 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c11__mean_counts_contribs.bw 694.9 MB 52a287b89c3e1329f40fda46d0da0feb
genomic_resource.yaml 1.3 KB 213a01049b60b17652089d2241d28dcb
statistics/