Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c11/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c11
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c11_mean_pred_corrected float

liu2026Multiomics_Eye_c11_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c11_mean_pred_corrected [0.00206, 7.16]
n
59,821,996
mean
0.113
sd
0.176

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 598219961.86% 59821976
chr1 5758132 2.31% 5758132
chr2 4561737 1.88% 4561737
chr3 3520879 1.78% 3520877
chr4 2575613 1.35% 2575612
chr5 3200643 1.76% 3200640
chr6 3386013 1.98% 3386012
chr7 3140495 1.97% 3140495
chr8 2630843 1.81% 2630842
chr9 2546504 1.84% 2546503
chr10 2893319 2.16% 2893317
chr11 3366113 2.49% 3366112
chr12 2911242 2.18% 2911240
chr13 1484978 1.30% 1484978
chr14 1892151 1.77% 1892151
chr15 2006276 1.97% 2006276
chr16 2140652 2.37% 2140651
chr17 2929081 3.52% 2929080
chr18 1417702 1.76% 1417702
chr19 2681848 4.58% 2681848
chr20 1646107 2.55% 1646107
chr21 597824 1.28% 597824
chr22 1187303 2.34% 1187300
chrX 1333513 0.85% 1333512
chrY 13028 0.02% 13028
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59821976 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c11__mean_pred_corrected.bw 453.48 MB 5924a458a8eca97a5288dd1f1ec86bcb
genomic_resource.yaml 1.27 KB 2ca787fb81be5bcb5fb01ffbc98f3216
statistics/