Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c12_mean_counts_contribs float

liu2026Multiomics_Eye_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c12_mean_counts_contribs [-0.0302, 0.0907]
n
94,389,814
mean
4.41e-05
sd
0.00291

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 943898142.94% 93525097
chr1 9363041 3.76% 9277350
chr2 7142543 2.95% 7076280
chr3 5910569 2.98% 5854517
chr4 4552052 2.39% 4507798
chr5 4885560 2.69% 4840338
chr6 5656375 3.31% 5603896
chr7 4773919 3.00% 4729124
chr8 3961523 2.73% 3924805
chr9 4202507 3.04% 4164231
chr10 4302289 3.22% 4262626
chr11 5142665 3.81% 5096432
chr12 4760380 3.57% 4717051
chr13 2197248 1.92% 2176622
chr14 3044809 2.84% 3016660
chr15 3065133 3.01% 3036779
chr16 3200268 3.54% 3172451
chr17 4583985 5.51% 4544076
chr18 1864923 2.32% 1845962
chr19 4068754 6.94% 4035709
chr20 2476790 3.84% 2454692
chr21 1046929 2.24% 1037337
chr22 1799834 3.54% 1784129
chrX 2378918 1.52% 2357490
chrY 8800 0.02% 8742
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93525097 1 957 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c12__mean_counts_contribs.bw 579.75 MB f27edc53a32617710f2a20489d16ff04
genomic_resource.yaml 1.3 KB affb28a47d60ffd8291086f89acec307
statistics/