Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c12/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c12
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c12_mean_pred_corrected float

liu2026Multiomics_Eye_c12_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c12_mean_pred_corrected [0.00134, 7.61]
n
49,086,513
mean
0.0839
sd
0.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 490865131.53% 49086494
chr1 4883079 1.96% 4883076
chr2 3711234 1.53% 3711232
chr3 3054157 1.54% 3054157
chr4 2348603 1.23% 2348603
chr5 2531526 1.39% 2531523
chr6 2948997 1.73% 2948995
chr7 2462185 1.55% 2462185
chr8 2047986 1.41% 2047984
chr9 2173061 1.57% 2173060
chr10 2233517 1.67% 2233517
chr11 2676198 1.98% 2676196
chr12 2491405 1.87% 2491404
chr13 1133323 0.99% 1133323
chr14 1585395 1.48% 1585395
chr15 1587706 1.56% 1587706
chr16 1667367 1.85% 1667366
chr17 2406661 2.89% 2406661
chr18 965587 1.20% 965587
chr19 2172697 3.71% 2172696
chr20 1276567 1.98% 1276566
chr21 543674 1.16% 543674
chr22 933372 1.84% 933372
chrX 1246758 0.80% 1246758
chrY 5458 0.01% 5458
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49086494 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c12__mean_pred_corrected.bw 372.18 MB 0d11866ae2c95008087eba00733e95f9
genomic_resource.yaml 1.27 KB 30cc20b1bf14538444755a151818e757
statistics/