Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c13/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c13
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c13_mean_counts_contribs float

liu2026Multiomics_Eye_c13_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c13_mean_counts_contribs [-0.0768, 0.112]
n
122,517,304
mean
0.000142
sd
0.00335

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1225173043.82% 121558392
chr1 11859418 4.76% 11767945
chr2 9575702 3.95% 9500416
chr3 7754643 3.91% 7692927
chr4 5069209 2.66% 5024757
chr5 6468426 3.56% 6416197
chr6 6700551 3.92% 6647224
chr7 6138963 3.85% 6090381
chr8 5120827 3.53% 5079676
chr9 5560170 4.02% 5517007
chr10 6151152 4.60% 6103907
chr11 6763274 5.01% 6712429
chr12 5899199 4.43% 5852470
chr13 2948759 2.58% 2924559
chr14 3869098 3.61% 3839306
chr15 4106395 4.03% 4074549
chr16 4629001 5.12% 4595054
chr17 5942203 7.14% 5898559
chr18 2477229 3.08% 2455520
chr19 4814316 8.21% 4780242
chr20 3468083 5.38% 3442239
chr21 1357243 2.91% 1346584
chr22 2736608 5.39% 2716772
chrX 3063935 1.96% 3039202
chrY 42900 0.07% 40470
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 121558392 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c13__mean_counts_contribs.bw 753.99 MB df0c3d9bbb219f539875d64d5871f492
genomic_resource.yaml 1.3 KB 1e284b5745016aae882b3a6463ab10ef
statistics/