Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c13/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c13
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c13_mean_pred_corrected float

liu2026Multiomics_Eye_c13_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c13_mean_pred_corrected [0.000821, 7.25]
n
63,748,042
mean
0.0932
sd
0.153

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 637480421.99% 63747097
chr1 6193874 2.49% 6193874
chr2 4972426 2.05% 4972424
chr3 4042156 2.04% 4042155
chr4 2631832 1.38% 2631831
chr5 3353848 1.85% 3353848
chr6 3515113 2.06% 3515112
chr7 3176934 1.99% 3176933
chr8 2632432 1.81% 2632431
chr9 2888239 2.09% 2888239
chr10 3192511 2.39% 3192508
chr11 3512403 2.60% 3512401
chr12 3066587 2.30% 3066585
chr13 1535357 1.34% 1535354
chr14 2022083 1.89% 2022083
chr15 2126106 2.08% 2126106
chr16 2405591 2.66% 2405591
chr17 3127924 3.76% 3127923
chr18 1279286 1.59% 1279286
chr19 2556386 4.36% 2556386
chr20 1786540 2.77% 1786540
chr21 704854 1.51% 704854
chr22 1408287 2.77% 1408287
chrX 1594797 1.02% 1594796
chrY 22476 0.04% 21550
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63747097 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c13__mean_pred_corrected.bw 483.3 MB 10fa0bb694014a74c4b7ebdb54ae8a09
genomic_resource.yaml 1.27 KB 5adfffdff38b329451ce350e9bed7d9f
statistics/