Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c14/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c14
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c14_mean_counts_contribs float

liu2026Multiomics_Eye_c14_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c14_mean_counts_contribs [-0.0366, 0.125]
n
82,355,336
mean
8.49e-05
sd
0.00311

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 823553362.57% 81628727
chr1 8003948 3.21% 7934340
chr2 6422434 2.65% 6365214
chr3 4921902 2.48% 4877267
chr4 3569799 1.88% 3535113
chr5 4010373 2.21% 3974185
chr6 4512487 2.64% 4471983
chr7 4105830 2.58% 4069435
chr8 3337782 2.30% 3307646
chr9 3734940 2.70% 3701601
chr10 3810720 2.85% 3777646
chr11 4795560 3.55% 4753701
chr12 4107200 3.08% 4070545
chr13 1866722 1.63% 1849593
chr14 2648330 2.47% 2625200
chr15 2751377 2.70% 2726695
chr16 3097672 3.43% 3071688
chr17 4270682 5.13% 4234656
chr18 1575018 1.96% 1560508
chr19 3797223 6.48% 3766983
chr20 2303074 3.57% 2283139
chr21 879407 1.88% 871432
chr22 1826797 3.59% 1811855
chrX 2001831 1.28% 1984116
chrY 4228 0.01% 4186
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81628727 1 936 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c14__mean_counts_contribs.bw 506.0 MB 909d071793241e2c5c65f7b92137050b
genomic_resource.yaml 1.3 KB 61d31215ac34728abe037ef1b1b4e89c
statistics/