Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c14/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c14
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c14_mean_pred_corrected float

liu2026Multiomics_Eye_c14_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c14_mean_pred_corrected [0.000943, 4.21]
n
42,613,558
mean
0.0594
sd
0.0827

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 426135581.33% 42613546
chr1 4151589 1.67% 4151589
chr2 3317473 1.37% 3317471
chr3 2542369 1.28% 2542368
chr4 1840041 0.97% 1840041
chr5 2075017 1.14% 2075015
chr6 2360080 1.38% 2360080
chr7 2124572 1.33% 2124572
chr8 1718935 1.18% 1718935
chr9 1929169 1.39% 1929168
chr10 1977370 1.48% 1977370
chr11 2470085 1.83% 2470084
chr12 2123191 1.59% 2123190
chr13 964095 0.84% 964094
chr14 1372827 1.28% 1372827
chr15 1412499 1.38% 1412499
chr16 1598505 1.77% 1598504
chr17 2216637 2.66% 2216636
chr18 811198 1.01% 811197
chr19 1997001 3.41% 1997001
chr20 1178638 1.83% 1178638
chr21 453696 0.97% 453696
chr22 936796 1.84% 936796
chrX 1039775 0.67% 1039775
chrY 2000 <0.01% 2000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42613546 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c14__mean_pred_corrected.bw 322.91 MB 47344b2608dbc013a1b417b2e721e32b
genomic_resource.yaml 1.27 KB c168e138e067270c264610744f7f00d2
statistics/