Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c15/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c15
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c15_mean_counts_contribs float

liu2026Multiomics_Eye_c15_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c15_mean_counts_contribs [-0.0279, 0.0885]
n
90,591,918
mean
8.92e-07
sd
0.00281

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 905919182.82% 89824097
chr1 8946211 3.59% 8870532
chr2 6926123 2.86% 6867017
chr3 5696569 2.87% 5647055
chr4 4114828 2.16% 4077780
chr5 4696406 2.59% 4656050
chr6 5025824 2.94% 4983156
chr7 4538249 2.85% 4499073
chr8 3767525 2.60% 3735034
chr9 4044953 2.92% 4011069
chr10 4133305 3.09% 4098575
chr11 5163644 3.82% 5120355
chr12 4384781 3.29% 4348068
chr13 2188925 1.91% 2169952
chr14 2850369 2.66% 2826492
chr15 2975718 2.92% 2950519
chr16 3295266 3.65% 3268275
chr17 4466853 5.37% 4430421
chr18 1933572 2.41% 1915942
chr19 3998442 6.82% 3966032
chr20 2420074 3.76% 2400155
chr21 953351 2.04% 945332
chr22 1927499 3.79% 1911659
chrX 2137089 1.37% 2119270
chrY 6342 0.01% 6284
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89824097 1 956 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c15__mean_counts_contribs.bw 556.57 MB 1012012150212bbcdab8677ec0bc18e9
genomic_resource.yaml 1.3 KB 55347052e4c4fe5bdcd8265d53cc0278
statistics/