Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c15/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c15
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c15_mean_pred_corrected float

liu2026Multiomics_Eye_c15_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c15_mean_pred_corrected [0.0018, 5.23]
n
46,510,454
mean
0.0627
sd
0.0927

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 465104541.45% 46510440
chr1 4599273 1.85% 4599271
chr2 3549569 1.47% 3549569
chr3 2925780 1.48% 2925779
chr4 2102478 1.11% 2102478
chr5 2405228 1.32% 2405227
chr6 2604085 1.52% 2604085
chr7 2308446 1.45% 2308445
chr8 1924233 1.33% 1924233
chr9 2063931 1.49% 2063931
chr10 2115174 1.58% 2115173
chr11 2646242 1.96% 2646241
chr12 2265475 1.70% 2265472
chr13 1117292 0.98% 1117291
chr14 1465381 1.37% 1465380
chr15 1529741 1.50% 1529741
chr16 1688378 1.87% 1688377
chr17 2311701 2.78% 2311701
chr18 982259 1.22% 982259
chr19 2100162 3.58% 2100161
chr20 1230536 1.91% 1230536
chr21 488907 1.05% 488907
chr22 980939 1.93% 980939
chrX 1102244 0.71% 1102244
chrY 3000 0.01% 3000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46510440 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c15__mean_pred_corrected.bw 352.41 MB 2f25ea7f8e600845b026edebf15104da
genomic_resource.yaml 1.27 KB f3e296153eb4f3f859bdd43583eb520a
statistics/