Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c16/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c16
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c16_mean_counts_contribs float

liu2026Multiomics_Eye_c16_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c16_mean_counts_contribs [-0.0343, 0.0736]
n
89,105,153
mean
1.3e-05
sd
0.00264

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 891051532.78% 88183900
chr1 8345620 3.35% 8261024
chr2 7008765 2.89% 6934532
chr3 5800594 2.93% 5739362
chr4 4398900 2.31% 4350281
chr5 4890665 2.69% 4838448
chr6 5254509 3.08% 5199178
chr7 4634521 2.91% 4585720
chr8 4011880 2.76% 3969307
chr9 3818615 2.76% 3779539
chr10 4241756 3.17% 4198113
chr11 4801552 3.55% 4752774
chr12 4378526 3.29% 4333099
chr13 2169569 1.90% 2146495
chr14 2810543 2.63% 2781863
chr15 2873637 2.82% 2844501
chr16 2980012 3.30% 2950936
chr17 3911025 4.70% 3873436
chr18 1885462 2.35% 1863379
chr19 3601851 6.14% 3568848
chr20 2350362 3.65% 2326855
chr21 983784 2.11% 972581
chr22 1674451 3.29% 1658396
chrX 2276440 1.46% 2253150
chrY 2114 <0.01% 2083
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 88183900 1 1002 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c16__mean_counts_contribs.bw 547.5 MB 6eba2e6b4fcb775f7652211604a1270e
genomic_resource.yaml 1.3 KB 9bf575b5a4e46cb3f67cfcea532c7197
statistics/