Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c16/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c16
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c16_mean_pred_corrected float

liu2026Multiomics_Eye_c16_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c16_mean_pred_corrected [0.00102, 2.67]
n
44,612,948
mean
0.0398
sd
0.0579

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 446129481.39% 44612927
chr1 4194071 1.68% 4194070
chr2 3501600 1.45% 3501598
chr3 2892266 1.46% 2892263
chr4 2187190 1.15% 2187189
chr5 2433494 1.34% 2433493
chr6 2633807 1.54% 2633806
chr7 2303451 1.45% 2303449
chr8 2000383 1.38% 2000383
chr9 1905409 1.38% 1905408
chr10 2114923 1.58% 2114923
chr11 2408813 1.78% 2408812
chr12 2196476 1.65% 2196476
chr13 1083460 0.95% 1083460
chr14 1415818 1.32% 1415817
chr15 1440185 1.41% 1440185
chr16 1494762 1.65% 1494762
chr17 1975472 2.37% 1975470
chr18 932564 1.16% 932562
chr19 1850119 3.16% 1850118
chr20 1174030 1.82% 1174030
chr21 491066 1.05% 491065
chr22 838970 1.65% 838969
chrX 1143619 0.73% 1143619
chrY 1000 <0.01% 1000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44612927 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c16__mean_pred_corrected.bw 338.4 MB 5121b9e7de7d20483f11b89541f959e4
genomic_resource.yaml 1.27 KB 9e40ff57a61c38fc2edc1b33cfbdc40e
statistics/