Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c17/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c17
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c17_mean_counts_contribs float

liu2026Multiomics_Eye_c17_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c17_mean_counts_contribs [-0.0337, 0.0844]
n
85,929,360
mean
5.98e-06
sd
0.00268

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 859293602.68% 85145731
chr1 8339543 3.35% 8263256
chr2 6717681 2.77% 6655317
chr3 5383088 2.71% 5332830
chr4 4002096 2.10% 3962477
chr5 4722022 2.60% 4677701
chr6 4964809 2.91% 4919065
chr7 4509250 2.83% 4467543
chr8 3621986 2.50% 3588452
chr9 3640069 2.63% 3606863
chr10 4015213 3.00% 3978728
chr11 4676297 3.46% 4634495
chr12 4330015 3.25% 4290521
chr13 2158985 1.89% 2138045
chr14 2757163 2.58% 2732311
chr15 2852244 2.80% 2826554
chr16 2868905 3.18% 2844433
chr17 3851491 4.63% 3818373
chr18 1798303 2.24% 1781498
chr19 3734386 6.37% 3704049
chr20 2158750 3.35% 2139502
chr21 910533 1.95% 902143
chr22 1681980 3.31% 1667520
chrX 2228209 1.43% 2207771
chrY 6342 0.01% 6284
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85145731 1 945 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c17__mean_counts_contribs.bw 527.98 MB 6f0abf3b66076a03cc84c2d76bc60489
genomic_resource.yaml 1.3 KB 8003dd85a750bad23028a971dd50444e
statistics/