Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c17/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c17
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c17_mean_pred_corrected float

liu2026Multiomics_Eye_c17_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c17_mean_pred_corrected [0.000782, 2.13]
n
42,960,257
mean
0.0331
sd
0.0492

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 429602571.34% 42960250
chr1 4173787 1.68% 4173787
chr2 3349415 1.38% 3349414
chr3 2683518 1.35% 2683518
chr4 1986628 1.04% 1986626
chr5 2345948 1.29% 2345948
chr6 2497573 1.46% 2497573
chr7 2244709 1.41% 2244709
chr8 1804325 1.24% 1804324
chr9 1816516 1.31% 1816516
chr10 2003585 1.50% 2003585
chr11 2340864 1.73% 2340863
chr12 2170583 1.63% 2170583
chr13 1066371 0.93% 1066371
chr14 1384082 1.29% 1384080
chr15 1415780 1.39% 1415780
chr16 1442053 1.60% 1442053
chr17 1944474 2.34% 1944474
chr18 890459 1.11% 890459
chr19 1913415 3.26% 1913415
chr20 1075934 1.67% 1075934
chr21 454820 0.97% 454820
chr22 835669 1.64% 835669
chrX 1116749 0.72% 1116749
chrY 3000 0.01% 3000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42960250 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c17__mean_pred_corrected.bw 326.16 MB 7b4955977e21390635d46498a8076d9a
genomic_resource.yaml 1.27 KB 932ea7be162c406ba8075f61dec814fe
statistics/