Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c18/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c18
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c18
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c18_mean_counts_contribs float

liu2026Multiomics_Eye_c18_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c18_mean_counts_contribs [-0.0336, 0.0809]
n
84,150,511
mean
1.69e-05
sd
0.00267

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 841505112.62% 83335423
chr1 8125931 3.26% 8046616
chr2 6558556 2.71% 6494205
chr3 5356107 2.70% 5302848
chr4 3893490 2.05% 3854519
chr5 4244006 2.34% 4202342
chr6 5016548 2.94% 4967990
chr7 4317427 2.71% 4275409
chr8 3607689 2.49% 3572204
chr9 3660662 2.65% 3625597
chr10 3932661 2.94% 3894111
chr11 4713969 3.49% 4668427
chr12 4139011 3.11% 4099219
chr13 1941913 1.70% 1922890
chr14 2681982 2.51% 2656412
chr15 2645689 2.59% 2620223
chr16 2933553 3.25% 2906067
chr17 3942828 4.74% 3905109
chr18 1764002 2.19% 1746423
chr19 3868251 6.60% 3833188
chr20 2274641 3.53% 2253096
chr21 938077 2.01% 928911
chr22 1657463 3.26% 1642097
chrX 1931827 1.24% 1913322
chrY 4228 0.01% 4198
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83335423 1 977 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c18__mean_counts_contribs.bw 516.72 MB 225fc67b8cf13417bae4700ed6b5f40a
genomic_resource.yaml 1.3 KB bd325806c0248cad888376dac24ce730
statistics/