Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c18/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c18
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c18
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c18_mean_pred_corrected float

liu2026Multiomics_Eye_c18_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c18_mean_pred_corrected [0.000654, 2.03]
n
41,982,899
mean
0.0336
sd
0.0501

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 419828991.31% 41982876
chr1 4061654 1.63% 4061653
chr2 3259897 1.35% 3259895
chr3 2666665 1.34% 2666663
chr4 1933639 1.02% 1933639
chr5 2110421 1.16% 2110419
chr6 2513545 1.47% 2513542
chr7 2137235 1.34% 2137234
chr8 1792746 1.24% 1792746
chr9 1820541 1.32% 1820540
chr10 1955553 1.46% 1955551
chr11 2353053 1.74% 2353051
chr12 2068244 1.55% 2068241
chr13 968886 0.85% 968885
chr14 1344236 1.26% 1344235
chr15 1312493 1.29% 1312493
chr16 1459345 1.62% 1459345
chr17 1986016 2.39% 1986016
chr18 871071 1.08% 871071
chr19 1983187 3.38% 1983186
chr20 1129093 1.75% 1129092
chr21 466446 1.00% 466446
chr22 822276 1.62% 822276
chrX 964657 0.62% 964657
chrY 2000 <0.01% 2000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41982876 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c18__mean_pred_corrected.bw 318.65 MB 33c52f0d089c513155c23e7ab28db9eb
genomic_resource.yaml 1.27 KB 4ffcaaf991453529bd651cfea3561237
statistics/