Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c2_mean_counts_contribs float

liu2026Multiomics_Eye_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c2_mean_counts_contribs [-0.0744, 0.219]
n
140,752,050
mean
0.000218
sd
0.00408

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1407520504.39% 139887329
chr1 13580307 5.45% 13496880
chr2 10659361 4.40% 10594030
chr3 8475292 4.27% 8422242
chr4 6218082 3.27% 6177207
chr5 7488043 4.12% 7442310
chr6 7594024 4.45% 7547688
chr7 7277857 4.57% 7232313
chr8 6027894 4.15% 5990550
chr9 6064616 4.38% 6026612
chr10 6363493 4.76% 6323813
chr11 8290313 6.14% 8240449
chr12 6796790 5.10% 6755538
chr13 3405320 2.98% 3384137
chr14 4606881 4.30% 4579268
chr15 4818066 4.72% 4788357
chr16 5032235 5.57% 5002314
chr17 7064358 8.48% 7022487
chr18 3204692 3.99% 3182684
chr19 6005290 10.24% 5970409
chr20 4114984 6.39% 4089896
chr21 1447171 3.10% 1438109
chr22 2939986 5.79% 2922552
chrX 3213842 2.06% 3194688
chrY 63153 0.11% 62796
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 139887329 1 961 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c2__mean_counts_contribs.bw 864.33 MB a0a0a57a21e371862de266a7e8eba2e2
genomic_resource.yaml 1.3 KB 7a2a0c71affe884276f9087eb99af0ea
statistics/