Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c2/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c2
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c2_mean_pred_corrected float

liu2026Multiomics_Eye_c2_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c2_mean_pred_corrected [0.00263, 27.4]
n
75,516,841
mean
0.241
sd
0.482

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 755168412.35% 75516817
chr1 7301750 2.93% 7301746
chr2 5699280 2.35% 5699276
chr3 4499733 2.27% 4499733
chr4 3319539 1.75% 3319538
chr5 3986762 2.20% 3986762
chr6 4090268 2.39% 4090267
chr7 3876322 2.43% 3876320
chr8 3212234 2.21% 3212232
chr9 3253015 2.35% 3253014
chr10 3403451 2.54% 3403450
chr11 4449490 3.29% 4449489
chr12 3662224 2.75% 3662224
chr13 1820448 1.59% 1820448
chr14 2488312 2.32% 2488311
chr15 2584586 2.53% 2584584
chr16 2708738 3.00% 2708738
chr17 3837255 4.61% 3837255
chr18 1697162 2.11% 1697161
chr19 3305396 5.64% 3305394
chr20 2197886 3.41% 2197886
chr21 769122 1.65% 769121
chr22 1573552 3.10% 1573552
chrX 1745013 1.12% 1745013
chrY 35303 0.06% 35303
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 75516817 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c2__mean_pred_corrected.bw 571.45 MB 6369e978fc258686565010bcecc4a804
genomic_resource.yaml 1.26 KB 37ddf5409cd60772b8569cf1133cf5fe
statistics/