Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c3_mean_counts_contribs float

liu2026Multiomics_Eye_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c3_mean_counts_contribs [-0.0657, 0.182]
n
149,036,476
mean
0.00026
sd
0.00373

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1490364764.64% 148028150
chr1 14074452 5.65% 13978873
chr2 11642495 4.81% 11563346
chr3 8696513 4.39% 8636116
chr4 6863200 3.61% 6813982
chr5 7865281 4.33% 7811276
chr6 8406836 4.92% 8348730
chr7 7813936 4.90% 7759953
chr8 6525266 4.50% 6480663
chr9 6404183 4.63% 6361269
chr10 7228222 5.40% 7179401
chr11 8509576 6.30% 8453761
chr12 7328422 5.50% 7278474
chr13 3753968 3.28% 3726849
chr14 4745583 4.43% 4713700
chr15 4886254 4.79% 4853107
chr16 5293743 5.86% 5259555
chr17 7045075 8.46% 6999541
chr18 3580408 4.45% 3554274
chr19 5940591 10.13% 5903766
chr20 4332783 6.72% 4304759
chr21 1751115 3.75% 1739241
chr22 3093351 6.09% 3073612
chrX 3210808 2.06% 3189767
chrY 44415 0.08% 44135
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 148028150 1 949 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c3__mean_counts_contribs.bw 915.91 MB 3950297ddbd07192e03c58f92f50c6af
genomic_resource.yaml 1.3 KB baa5b6700c1dd8061c2a6c05c819f27d
statistics/