Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c3/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c3
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c3_mean_pred_corrected float

liu2026Multiomics_Eye_c3_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c3_mean_pred_corrected [0.000379, 20.7]
n
80,048,491
mean
0.2
sd
0.382

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 800484912.49% 80048455
chr1 7573264 3.04% 7573259
chr2 6237364 2.58% 6237362
chr3 4638097 2.34% 4638096
chr4 3661219 1.92% 3661219
chr5 4209420 2.32% 4209419
chr6 4514814 2.64% 4514813
chr7 4171186 2.62% 4171186
chr8 3481914 2.40% 3481912
chr9 3434078 2.48% 3434074
chr10 3866202 2.89% 3866198
chr11 4579726 3.39% 4579726
chr12 3938595 2.96% 3938592
chr13 1999426 1.75% 1999424
chr14 2559107 2.39% 2559104
chr15 2628269 2.58% 2628269
chr16 2845392 3.15% 2845391
chr17 3835169 4.61% 3835169
chr18 1896150 2.36% 1896150
chr19 3282523 5.60% 3282520
chr20 2324514 3.61% 2324511
chr21 927059 1.98% 927059
chr22 1663046 3.27% 1663045
chrX 1756892 1.13% 1756892
chrY 25065 0.04% 25065
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80048455 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c3__mean_pred_corrected.bw 605.21 MB 43e92926c1a2823b9ad021e3339c43ca
genomic_resource.yaml 1.26 KB 30cea4b674f4db615ded73ff43034e30
statistics/