Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c4_mean_counts_contribs float

liu2026Multiomics_Eye_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c4_mean_counts_contribs [-0.0575, 0.116]
n
117,578,519
mean
0.000118
sd
0.00301

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1175785193.66% 116650296
chr1 11382108 4.57% 11292980
chr2 9082277 3.75% 9009783
chr3 7243653 3.65% 7184815
chr4 5432876 2.86% 5386688
chr5 6226677 3.43% 6176879
chr6 7042454 4.12% 6986584
chr7 5795784 3.64% 5749576
chr8 5113688 3.52% 5072688
chr9 5199677 3.76% 5158548
chr10 5701560 4.26% 5656107
chr11 6568502 4.86% 6518324
chr12 5826231 4.37% 5780799
chr13 2803870 2.45% 2780924
chr14 3821963 3.57% 3791914
chr15 3925824 3.85% 3894793
chr16 4045270 4.48% 4014573
chr17 5567299 6.69% 5526034
chr18 2344436 2.92% 2324026
chr19 4873589 8.31% 4839485
chr20 3187096 4.95% 3162756
chr21 1362884 2.92% 1351614
chr22 2296360 4.52% 2279183
chrX 2718732 1.74% 2697725
chrY 15709 0.03% 13498
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116650296 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c4__mean_counts_contribs.bw 723.12 MB a1605cfd8ee49ec7788d7c1e32cbf006
genomic_resource.yaml 1.3 KB d9f97692689529664943215e3aafbde5
statistics/