Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c4/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c4
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c4_mean_pred_corrected float

liu2026Multiomics_Eye_c4_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c4_mean_pred_corrected [0.00225, 12.5]
n
62,297,973
mean
0.139
sd
0.236

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 622979731.94% 62297004
chr1 6065036 2.44% 6065035
chr2 4791539 1.98% 4791536
chr3 3816610 1.92% 3816609
chr4 2869050 1.51% 2869050
chr5 3272687 1.80% 3272685
chr6 3746969 2.19% 3746969
chr7 3046548 1.91% 3046548
chr8 2681471 1.85% 2681471
chr9 2752431 1.99% 2752430
chr10 3011463 2.25% 3011462
chr11 3494173 2.59% 3494171
chr12 3102404 2.33% 3102402
chr13 1472083 1.29% 1472083
chr14 2024295 1.89% 2024295
chr15 2076062 2.04% 2076061
chr16 2140580 2.37% 2140578
chr17 2983909 3.58% 2983909
chr18 1234498 1.54% 1234498
chr19 2654823 4.53% 2654823
chr20 1673635 2.60% 1673634
chr21 723428 1.55% 723428
chr22 1205723 2.37% 1205722
chrX 1450645 0.93% 1450645
chrY 7911 0.01% 6960
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62297004 1 910 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c4__mean_pred_corrected.bw 471.63 MB d64925c669e9ac0fea968d98382eb1eb
genomic_resource.yaml 1.26 KB c4168f71f5df66620dbcfe8807d89d49
statistics/