Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c5_mean_counts_contribs float

liu2026Multiomics_Eye_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c5_mean_counts_contribs [-0.0543, 0.161]
n
158,627,545
mean
0.000232
sd
0.00356

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1586275454.94% 157635437
chr1 15523868 6.24% 15427082
chr2 12689376 5.24% 12610432
chr3 10177056 5.13% 10112932
chr4 7485836 3.94% 7437952
chr5 8415866 4.64% 8362890
chr6 9123644 5.34% 9066792
chr7 8009575 5.03% 7959124
chr8 6749526 4.65% 6707748
chr9 7085857 5.12% 7041689
chr10 7624113 5.70% 7575025
chr11 8885723 6.58% 8831198
chr12 7580865 5.69% 7533720
chr13 3860372 3.38% 3836048
chr14 4999731 4.67% 4969377
chr15 5219444 5.12% 5186361
chr16 5312179 5.88% 5279903
chr17 7538398 9.05% 7491526
chr18 3396162 4.23% 3373194
chr19 5873447 10.02% 5837423
chr20 4259721 6.61% 4233195
chr21 1816466 3.89% 1804501
chr22 3390424 6.67% 3369540
chrX 3600761 2.31% 3578706
chrY 9135 0.02% 9079
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 157635437 1 990 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c5__mean_counts_contribs.bw 975.14 MB 212eec83253f9c998256146b1e7b81d7
genomic_resource.yaml 1.3 KB d505bb69de9fc6caf3c612b066a46daa
statistics/