Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c5/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c5
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c5_mean_pred_corrected float

liu2026Multiomics_Eye_c5_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c5_mean_pred_corrected [0.000693, 16.4]
n
83,939,049
mean
0.164
sd
0.289

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 839390492.62% 83939027
chr1 8252291 3.31% 8252290
chr2 6702936 2.77% 6702932
chr3 5356456 2.70% 5356454
chr4 3938328 2.07% 3938327
chr5 4419926 2.43% 4419925
chr6 4832917 2.83% 4832916
chr7 4215637 2.65% 4215636
chr8 3551788 2.45% 3551787
chr9 3757912 2.72% 3757912
chr10 4029288 3.01% 4029287
chr11 4699134 3.48% 4699134
chr12 4015790 3.01% 4015788
chr13 2019246 1.77% 2019246
chr14 2659814 2.48% 2659813
chr15 2748389 2.69% 2748387
chr16 2812671 3.11% 2812669
chr17 4044581 4.86% 4044581
chr18 1784550 2.22% 1784550
chr19 3190543 5.44% 3190541
chr20 2230635 3.46% 2230635
chr21 960825 2.06% 960825
chr22 1784698 3.51% 1784698
chrX 1926015 1.23% 1926015
chrY 4679 0.01% 4679
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83939027 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c5__mean_pred_corrected.bw 635.42 MB 96bbf63c009942c821a13bf18d3da63c
genomic_resource.yaml 1.26 KB 3a6c402e70f2a7564ce3757937fe3bcd
statistics/