Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c6/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c6
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c6_mean_counts_contribs float

liu2026Multiomics_Eye_c6_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c6_mean_counts_contribs [-0.0626, 0.167]
n
187,859,672
mean
0.000251
sd
0.00345

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1878596725.85% 186585042
chr1 16678936 6.70% 16566796
chr2 15207442 6.28% 15104387
chr3 12114334 6.11% 12029675
chr4 9844694 5.18% 9773197
chr5 11035800 6.08% 10960021
chr6 11055516 6.47% 10979928
chr7 10037004 6.30% 9967923
chr8 9209824 6.35% 9147039
chr9 8018852 5.79% 7963304
chr10 9095351 6.80% 9033524
chr11 10196843 7.55% 10130284
chr12 9013889 6.76% 8952258
chr13 5545033 4.85% 5505948
chr14 5786621 5.41% 5748109
chr15 5929967 5.81% 5890054
chr16 6338547 7.02% 6297015
chr17 7456657 8.96% 7408495
chr18 5042588 6.27% 5007406
chr19 5726892 9.77% 5691306
chr20 4872748 7.56% 4839940
chr21 2144013 4.59% 2129546
chr22 3350223 6.59% 3328803
chrX 4151287 2.66% 4123529
chrY 6611 0.01% 6555
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 186585042 1 961 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c6__mean_counts_contribs.bw 1.13 GB 81a1dd8bef766d1da5ddc04329ad56a7
genomic_resource.yaml 1.3 KB ffe7b26109f4a33a38499dda57b825c4
statistics/