Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c6/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c6
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c6_mean_pred_corrected float

liu2026Multiomics_Eye_c6_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c6_mean_pred_corrected [0.000197, 14.8]
n
100,734,304
mean
0.174
sd
0.291

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1007343043.14% 100734228
chr1 8984381 3.61% 8984373
chr2 8133982 3.36% 8133978
chr3 6441511 3.25% 6441508
chr4 5220046 2.74% 5220040
chr5 5899223 3.25% 5899218
chr6 5918545 3.47% 5918542
chr7 5362427 3.37% 5362420
chr8 4901806 3.38% 4901803
chr9 4300249 3.11% 4300247
chr10 4860988 3.63% 4860983
chr11 5496031 4.07% 5496029
chr12 4836263 3.63% 4836260
chr13 2935382 2.57% 2935377
chr14 3117628 2.91% 3117627
chr15 3195259 3.13% 3195258
chr16 3401538 3.77% 3401534
chr17 4059265 4.88% 4059262
chr18 2678851 3.33% 2678848
chr19 3190649 5.44% 3190648
chr20 2604663 4.04% 2604659
chr21 1139370 2.44% 1139368
chr22 1800276 3.54% 1800276
chrX 2252702 1.44% 2252701
chrY 3269 0.01% 3269
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100734228 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c6__mean_pred_corrected.bw 759.88 MB 50c46e9aec89e49106b5dca61bfb5d2d
genomic_resource.yaml 1.26 KB 6b4802f04d03a6a4bbad3803870e2dd2
statistics/