Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c7/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c7
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c7_mean_counts_contribs float

liu2026Multiomics_Eye_c7_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c7_mean_counts_contribs [-0.0626, 0.153]
n
132,591,699
mean
0.000218
sd
0.00395

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1325916994.13% 131726227
chr1 12810772 5.15% 12727134
chr2 10200135 4.21% 10132450
chr3 7856557 3.96% 7803556
chr4 5874261 3.09% 5834086
chr5 7075691 3.90% 7028535
chr6 7169833 4.20% 7122285
chr7 6889208 4.32% 6843099
chr8 5836429 4.02% 5797512
chr9 5762991 4.16% 5725210
chr10 6126147 4.58% 6085395
chr11 7546746 5.59% 7498755
chr12 6538036 4.91% 6495669
chr13 3214278 2.81% 3192059
chr14 4416681 4.13% 4388203
chr15 4522758 4.43% 4494025
chr16 4723524 5.23% 4694258
chr17 6635257 7.97% 6594313
chr18 2926930 3.64% 2905678
chr19 5528673 9.43% 5496085
chr20 3867060 6.00% 3842554
chr21 1379089 2.95% 1369972
chr22 2795769 5.50% 2778860
chrX 2826177 1.81% 2808300
chrY 68697 0.12% 68234
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 131726227 1 935 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c7__mean_counts_contribs.bw 814.62 MB 542c676d4f4305f3b8c265c2610ee67f
genomic_resource.yaml 1.3 KB adb58de0aa22f06138904cbae031a1b6
statistics/