Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c7/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c7
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c7_mean_pred_corrected float

liu2026Multiomics_Eye_c7_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c7_mean_pred_corrected [0.00264, 11.6]
n
70,014,832
mean
0.131
sd
0.233

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 700148322.18% 70014804
chr1 6773628 2.72% 6773623
chr2 5358515 2.21% 5358514
chr3 4116531 2.08% 4116529
chr4 3084618 1.62% 3084617
chr5 3721607 2.05% 3721606
chr6 3800198 2.22% 3800197
chr7 3619975 2.27% 3619975
chr8 3056920 2.11% 3056920
chr9 3041909 2.20% 3041908
chr10 3214292 2.40% 3214292
chr11 3987723 2.95% 3987723
chr12 3458252 2.59% 3458249
chr13 1679330 1.47% 1679329
chr14 2337866 2.18% 2337863
chr15 2396672 2.35% 2396671
chr16 2497216 2.76% 2497215
chr17 3559899 4.28% 3559896
chr18 1532397 1.91% 1532396
chr19 3009441 5.13% 3009441
chr20 2031638 3.15% 2031637
chr21 720293 1.54% 720293
chr22 1468986 2.89% 1468984
chrX 1509825 0.97% 1509825
chrY 37101 0.06% 37101
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70014804 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c7__mean_pred_corrected.bw 530.8 MB 72dcd8ee36ccf9fd728c73b849449d4a
genomic_resource.yaml 1.26 KB 9fb9f5510c5cc84185e82bf0b2efd05a
statistics/