Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c8/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c8
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c8_mean_counts_contribs float

liu2026Multiomics_Eye_c8_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c8_mean_counts_contribs [-0.0573, 0.208]
n
115,710,056
mean
0.00019
sd
0.00403

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1157100563.61% 114876082
chr1 11263842 4.52% 11183638
chr2 8665887 3.58% 8603664
chr3 6966077 3.51% 6915475
chr4 5021328 2.64% 4983019
chr5 6439105 3.55% 6391859
chr6 6270851 3.67% 6225176
chr7 5940600 3.73% 5897144
chr8 4932494 3.40% 4896586
chr9 5083353 3.67% 5046577
chr10 5163955 3.86% 5126037
chr11 6554819 4.85% 6508847
chr12 5692931 4.27% 5651936
chr13 2839781 2.48% 2818513
chr14 3845736 3.59% 3818421
chr15 3859257 3.78% 3831351
chr16 4102482 4.54% 4073753
chr17 5832490 7.01% 5791593
chr18 2555044 3.18% 2535412
chr19 5151387 8.79% 5116064
chr20 3302877 5.13% 3279702
chr21 1232159 2.64% 1223026
chr22 2363729 4.65% 2347046
chrX 2607463 1.67% 2589007
chrY 22409 0.04% 22236
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114876082 1 951 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c8__mean_counts_contribs.bw 710.29 MB 656e4e4c4264a3faa1c5d1985da0731c
genomic_resource.yaml 1.3 KB a4f8667a6294be03974c6db42d789d67
statistics/