Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c8/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c8
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c8_mean_pred_corrected float

liu2026Multiomics_Eye_c8_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c8_mean_pred_corrected [0.00265, 7.63]
n
60,607,205
mean
0.102
sd
0.162

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 606072051.89% 60607189
chr1 5905164 2.37% 5905161
chr2 4536569 1.87% 4536569
chr3 3638000 1.83% 3637999
chr4 2622365 1.38% 2622364
chr5 3347461 1.84% 3347460
chr6 3301296 1.93% 3301296
chr7 3084824 1.94% 3084824
chr8 2568810 1.77% 2568809
chr9 2645444 1.91% 2645443
chr10 2699983 2.02% 2699983
chr11 3428597 2.54% 3428595
chr12 2991811 2.24% 2991811
chr13 1472620 1.29% 1472620
chr14 2024518 1.89% 2024517
chr15 2024515 1.98% 2024515
chr16 2157219 2.39% 2157219
chr17 3090652 3.71% 3090650
chr18 1329115 1.65% 1329114
chr19 2760577 4.71% 2760576
chr20 1716493 2.66% 1716493
chr21 642393 1.38% 642393
chr22 1231006 2.42% 1231005
chrX 1376504 0.88% 1376504
chrY 11269 0.02% 11269
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60607189 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c8__mean_pred_corrected.bw 459.82 MB aa2e58826bc776ec55b73d76ccf47b5c
genomic_resource.yaml 1.26 KB 5a77a74523cf07d062cb496a5ee0dca9
statistics/