Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c9/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Eye for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c9
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c9_mean_counts_contribs float

liu2026Multiomics_Eye_c9_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Eye_c9_mean_counts_contribs [-0.0354, 0.103]
n
107,456,177
mean
0.000114
sd
0.00307

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1074561773.35% 106541310
chr1 10480872 4.21% 10391240
chr2 8273143 3.42% 8201437
chr3 6658965 3.36% 6601263
chr4 4706075 2.47% 4661838
chr5 5589918 3.08% 5541328
chr6 6281088 3.68% 6226975
chr7 5230368 3.28% 5185294
chr8 4615736 3.18% 4575838
chr9 4577916 3.31% 4539215
chr10 5004864 3.74% 4962069
chr11 5826902 4.31% 5778730
chr12 5327444 4.00% 5282320
chr13 2596565 2.27% 2573793
chr14 3460578 3.23% 3431492
chr15 3520107 3.45% 3490385
chr16 3797238 4.20% 3766894
chr17 5320424 6.39% 5277329
chr18 2239062 2.79% 2217506
chr19 4892514 8.35% 4855167
chr20 3031083 4.70% 3006240
chr21 1266278 2.71% 1255581
chr22 2234446 4.40% 2216579
chrX 2502607 1.60% 2480958
chrY 21984 0.04% 21839
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106541310 1 973 1.01 1
global segment-length histogram

Files

Filename Size md5
Eye_c9__mean_counts_contribs.bw 660.14 MB e2e1b32622a7c20d88b35eb549a38f36
genomic_resource.yaml 1.3 KB 0daf1ad6533e9919d1c98690c9b9a847
statistics/