Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Eye/c9/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Eye for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Eye_c9
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Eye
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Eye_c9_mean_pred_corrected float

liu2026Multiomics_Eye_c9_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Eye_c9_mean_pred_corrected [0.00199, 8.05]
n
56,154,780
mean
0.106
sd
0.167

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 561547801.75% 56154756
chr1 5484313 2.20% 5484312
chr2 4302436 1.78% 4302433
chr3 3468619 1.75% 3468619
chr4 2444566 1.29% 2444564
chr5 2918943 1.61% 2918939
chr6 3292881 1.93% 3292879
chr7 2720456 1.71% 2720455
chr8 2393792 1.65% 2393792
chr9 2391520 1.73% 2391520
chr10 2613568 1.95% 2613567
chr11 3047792 2.26% 3047790
chr12 2792936 2.10% 2792935
chr13 1354759 1.18% 1354759
chr14 1805635 1.69% 1805633
chr15 1833407 1.80% 1833405
chr16 1981694 2.19% 1981693
chr17 2802657 3.37% 2802657
chr18 1155409 1.44% 1155409
chr19 2616586 4.46% 2616586
chr20 1580966 2.45% 1580966
chr21 659855 1.41% 659855
chr22 1168161 2.30% 1168161
chrX 1311871 0.84% 1311869
chrY 11958 0.02% 11958
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56154756 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Eye_c9__mean_pred_corrected.bw 425.69 MB d126ef5c9e20113209a4d6b23608e893
genomic_resource.yaml 1.26 KB 4e2299bab2b62c2a81fd81a9c2887cf3
statistics/