Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c0/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c0
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c0_mean_counts_contribs float

liu2026Multiomics_Liver_c0_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c0_mean_counts_contribs [-0.119, 0.577]
n
189,615,518
mean
0.000313
sd
0.00518

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1896155185.91% 188654386
chr1 19032643 7.64% 18936072
chr2 14659427 6.05% 14584793
chr3 12367137 6.24% 12303550
chr4 8054273 4.23% 8010749
chr5 9756454 5.37% 9707111
chr6 11355716 6.65% 11298304
chr7 9937985 6.24% 9887631
chr8 8020042 5.53% 7979172
chr9 8062583 5.83% 8022417
chr10 8564079 6.40% 8519620
chr11 9629270 7.13% 9582315
chr12 9390880 7.05% 9344374
chr13 4362880 3.81% 4340318
chr14 6186719 5.78% 6155553
chr15 6032002 5.91% 6000896
chr16 6754276 7.48% 6722339
chr17 8925698 10.72% 8880537
chr18 3802849 4.73% 3781799
chr19 7907649 13.49% 7872155
chr20 5020438 7.79% 4995921
chr21 2095384 4.49% 2082191
chr22 4458783 8.77% 4437686
chrX 5011081 3.21% 4985354
chrY 227270 0.40% 223529
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 188654386 1 2538 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c0__mean_counts_contribs.bw 1.14 GB 4d1b04295e474d56ef3a94272756ec61
genomic_resource.yaml 1.31 KB e766ea4056468e167754400df00693e2
statistics/