Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c0/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c0
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c0_mean_pred_corrected float

liu2026Multiomics_Liver_c0_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Liver_c0_mean_pred_corrected [0.00465, 350]
n
102,761,369
mean
1.1
sd
4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1027613693.20% 102759971
chr1 10343354 4.15% 10343351
chr2 7922598 3.27% 7922598
chr3 6669607 3.36% 6669598
chr4 4339232 2.28% 4339231
chr5 5249731 2.89% 5249731
chr6 6157948 3.61% 6157947
chr7 5346621 3.36% 5346618
chr8 4306843 2.97% 4306843
chr9 4375361 3.16% 4375357
chr10 4631756 3.46% 4631755
chr11 5244505 3.88% 5244503
chr12 5102639 3.83% 5102634
chr13 2348917 2.05% 2348916
chr14 3367829 3.15% 3367828
chr15 3252239 3.19% 3252237
chr16 3659983 4.05% 3659983
chr17 4900041 5.89% 4900040
chr18 2036546 2.53% 2036544
chr19 4386798 7.48% 4386795
chr20 2713480 4.21% 2713480
chr21 1133029 2.43% 1133029
chr22 2419915 4.76% 2419913
chrX 2730339 1.75% 2730338
chrY 122058 0.21% 120702
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102759971 1 1334 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c0__mean_pred_corrected.bw 781.3 MB b321929b20fc16a94c386b710436e26c
genomic_resource.yaml 1.27 KB c50b0b52ec1de32d68b2b8fd590c8b86
statistics/