Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c1/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c1
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c1_mean_counts_contribs float

liu2026Multiomics_Liver_c1_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c1_mean_counts_contribs [-0.125, 0.359]
n
308,395,744
mean
0.000412
sd
0.00498

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3083957449.61% 306799533
chr1 29605014 11.89% 29451932
chr2 24721303 10.21% 24594124
chr3 20704743 10.44% 20596498
chr4 14121907 7.42% 14045950
chr5 16430964 9.05% 16345846
chr6 18255495 10.69% 18161653
chr7 15828551 9.93% 15747197
chr8 13636900 9.40% 13566729
chr9 13056407 9.43% 12989433
chr10 15330395 11.46% 15250392
chr11 15272491 11.31% 15194955
chr12 15185878 11.39% 15107863
chr13 7756900 6.78% 7716126
chr14 10011763 9.35% 9960924
chr15 10050563 9.85% 9998276
chr16 10560584 11.69% 10508280
chr17 13060415 15.69% 12993249
chr18 7098557 8.83% 7059322
chr19 10278767 17.54% 10228315
chr20 8246960 12.80% 8205502
chr21 3478448 7.45% 3458237
chr22 6617538 13.02% 6585556
chrX 8894158 5.70% 8846438
chrY 191043 0.33% 186736
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 306799533 1 2526 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c1__mean_counts_contribs.bw 1.85 GB 0416b93134ea610a044d9f20165409fa
genomic_resource.yaml 1.31 KB fb42831f10bebbd9dfe9e505d0a1a6c6
statistics/