Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c1/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c1
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c1_mean_pred_corrected float

liu2026Multiomics_Liver_c1_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Liver_c1_mean_pred_corrected [0.000935, 223]
n
169,222,968
mean
0.988
sd
3.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1692229685.27% 169221330
chr1 16320529 6.56% 16320508
chr2 13528081 5.59% 13528064
chr3 11310113 5.70% 11310100
chr4 7682266 4.04% 7682256
chr5 8962717 4.94% 8962709
chr6 10026273 5.87% 10026253
chr7 8653239 5.43% 8653232
chr8 7425059 5.12% 7425046
chr9 7178940 5.19% 7178933
chr10 8408027 6.28% 8408017
chr11 8413545 6.23% 8413534
chr12 8316254 6.24% 8316248
chr13 4203933 3.68% 4203926
chr14 5519663 5.16% 5519654
chr15 5506843 5.40% 5506833
chr16 5829946 6.45% 5829938
chr17 7286059 8.75% 7286050
chr18 3857634 4.80% 3857630
chr19 5771585 9.85% 5771573
chr20 4525151 7.02% 4525139
chr21 1899120 4.07% 1899118
chr22 3682732 7.25% 3682728
chrX 4811351 3.08% 4811344
chrY 103908 0.18% 102497
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 169221330 1 706 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c1__mean_pred_corrected.bw 1.25 GB 9385672ee52674155749f49ade286ac8
genomic_resource.yaml 1.27 KB f886594a8ea520b62585b2ad6b927162
statistics/