Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c10/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c10
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c10_mean_counts_contribs float

liu2026Multiomics_Liver_c10_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c10_mean_counts_contribs [-0.0514, 0.258]
n
178,545,798
mean
0.000289
sd
0.00402

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1785457985.56% 177251806
chr1 17628451 7.08% 17499619
chr2 13926439 5.75% 13824668
chr3 11481523 5.79% 11396220
chr4 7728813 4.06% 7667864
chr5 9404461 5.18% 9334682
chr6 10417029 6.10% 10339990
chr7 9017113 5.66% 8950688
chr8 7897376 5.44% 7839318
chr9 7514293 5.43% 7461264
chr10 8788957 6.57% 8725317
chr11 9199058 6.81% 9134641
chr12 8743600 6.56% 8680665
chr13 4186144 3.66% 4154517
chr14 5688505 5.31% 5647847
chr15 5808658 5.70% 5766143
chr16 6321518 7.00% 6278752
chr17 8481206 10.19% 8423105
chr18 3804541 4.73% 3774568
chr19 6983483 11.91% 6938431
chr20 4922320 7.64% 4888234
chr21 2071080 4.43% 2056166
chr22 4044432 7.96% 4017646
chrX 4391978 2.81% 4359437
chrY 94820 0.17% 92024
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 177251806 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c10__mean_counts_contribs.bw 1.07 GB 927ec2d9b8d78fcdb6adff208901edd8
genomic_resource.yaml 1.31 KB 423c8700fb17dabe5c0f4a9fa95f307f
statistics/